Comments (2)
how did you call the docker container? Did you mount a directory of your host system to /data ?
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same issue here
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Related Issues (20)
- what about MICA MICB typing HOT 1
- The SolverFactory was unable to create the solver "glpk" HOT 1
- OptiType returns ValueError with some samples while running just fine with others
- could not open alignment file HOT 4
- output file column description
- error using docker
- Hi dear @andras86 , What's the meanning for "introns from " as picture beblow? I found it apprearing in https://github.com/FRED-2/OptiType/blob/master/hlatyper.py HOT 1
- Does OptiType only predict alleles in "freq_alleles" HOT 1
- Is it based on hg38 genome? HOT 3
- ValueError: too many values to unpack
- Maximal read length of 0 bps exceeded
- Want to use Optitype HLA results as input file for pVACseq, if someone could provide suggestion? HOT 2
- Installation problem with pyomo module HOT 1
- this team is no longer maintained HOT 1
- HLA typing 10x scRNA-seq data with Optitype
- unpaired reads, no mismatches, ambiguous HOT 1
- Razers3 being slow HOT 1
- Issue with downloading OptiType docker image HOT 1
- core dumped bad_alloc in seqan HOT 6
- Bam file to prefilter reads HOT 1
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