AssertionError: Index length did not match values about optitype HOT 4 CLOSED

Hi Jason,

Did the typing itself run through? Given the point of failure you should already have a TSV file in the output directory with the predicted HLA genotype. Would it be possible for you to paste its contents here?

from optitype.

Hello,

I do have the TSV:

    A1  A2  B1  B2  C1  C2  Reads   Objective
0   A*02:01 A*25:01 B*18:01 B*13:02 C*12:03 C*06:02 7250    6923.739999999979

from optitype.

Well, that looks what it should look like. This is such a strange failure I'm afraid we can only look into it if you send over the SAM file to us for debugging. I'll get in touch with the details.

from optitype.

Ok, Thank you. I appreicate the help!
Jason

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