Type: User
Company: Munster Technological University
Bio: Lecturer in computational biology and bioinformatics.
Research interests: Comparative genomics, microbial genomics, ecology and phylogenomics
Twitter: FrAn_BottAcini
Location: Cork
Blog: https://www.linkedin.com/in/francesca-bottacini-6719911a/
frbot's Projects
Calculate Average Nucleotide Identity (ANI) for prokaryotic genomes
A single molecule sequence assembler for genomes large and small.
Scripts for comparative genome analysis of bacterial genomes
This script uses NCBI's Entrez Programming Utilities to perform searches of NCBI databases. This script can return either the complete database records, or the IDs of the records.
Phylogenetic orthology inference for comparative genomics
Bioinfomratic bash scripts for general purposes
Genome assembly evaluation tool
Bash scripts to perform bowtie2 alignment and SNP analysis
hybrid assembly pipeline for bacterial genomes