franzkrah Goto Github PK

ale

Amalgamated likelihood estimation (ALE) is a probabilistic approach to exhaustively explore all reconciled gene trees that can be amalgamated as a combination of clades observed in a sample of gene trees. We implement the ALE approach in the context of a reconciliation model (cf. http://arxiv.org/abs/1211.4606 ), which allows for the duplication, transfer and loss of genes. We use ALE to efficiently approximate the sum of the joint likelihood over amalgamations and to find the reconciled gene tree that maximizes the joint likelihood among all such trees.

chromer

package for interacting with the chromosome counts database (CCDB) at http://ccdb.tau.ac.il http://ropensci.org

climind

:exclamation: This is a read-only mirror of the CRAN R package repository. ClimInd — Climate Indices. Homepage: https://gitlab.com/indecis-eu/indecis

communityecology

Code and data for Community Ecology book

cooccur

:exclamation: This is a read-only mirror of the CRAN R package repository. cooccur — Probabilistic Species Co-Occurrence Analysis in R

cowsay

cowsay w/ more animals in R

deep-learning

deeplearningbookcode-volume2

Python/Jupyter notebooks for Volume 2 of "Deep Learning - From Basics to Practice" by Andrew Glassner

detrending_in_r

franzkrah.github.io

My personal website

gistr

Interact with GitHub gists from R

hugo-academic

The website designer for Hugo. Build and deploy a beautiful website in minutes :rocket:

hugo-resume

A Hugo theme ported from startbootrap.com's resume template

knitr-examples

a collection of knitr examples

mitolina

MITOchondrial LINeage Analysis

mushroom_photos

onboarding

rOpenSci Onboarding

pilzebrd

Schnittstelle zur Webseite 'http://brd.pilzkartierung.de' zum download von Artenlisten für MTBs

ppmmr

Post-Processing of MotionMeerkat output in R

raup_crick

Fast version of raup_crick_abundance (Stegen et al. 2013)

rcsbi

Color Sampling from Biological Images

rgbif

Wrapper to the Global Biodiversity Information Facility API

rguidance

rGUIDANCE – alignment confidence score computation in R

rmycobank

rmycoportal

rMyCoPortal - an R package to interface with the Mycology Collections Portal

rsymbiota

Collection of interfaces to the Symbiota portals

shinydeveloperconference

Materials collected from the First Shiny Developer Conference Palo Alto, CA January 30-31 2016

tacmagic

tacmagic: PET Analysis in R

timetree

Interface to the TimeTree of Life website