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all_viral_seq_extraction

Extract all known viral sequences from NGS data

alona

analysis of single cell RNA sequencing data and cell type annotation

awesome-crispr

List of software/websites/databases/other stuff for genome engineering

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

biopython

Official git repository for Biopython (converted from CVS)

casmini-miseq-analysis

crispr-pacman-pool-generation

crispr-screening

Processed for pooled sgRNA screening analysis.

crop-seq

Data analysis scripts for Datlinger et. al, 2017 (doi:10.1038/nmeth.4177)

cs-notes

:books: 技术面试必备基础知识、Leetcode、计算机操作系统、计算机网络、系统设计、Java、Python、C++

data-science

test

deepcas13

deltasvm

Codes to run deltaSVM models to predict allelic TF binding

fermi-lite

Standalone C library for assembling Illumina short reads in small regions

fr-hit

open_pipelines

Pipelines for NGS data preprocessing by the Bock lab and friends

prodigal

Prodigal Gene Prediction Software

python-100-days

Python - 100天从新手到大师

rnaseq

Tools for RNASeq analysis take file from SRA file to Fastq, run QC, map to genome and find DE genes.

screening_protocols_manuscript

Scripts from the Joung et al Nature Protocols 2016 manuscript on knockout and transcriptional activation screening

seqtk

Toolkit for processing sequences in FASTA/Q formats

smart-seq3

Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).

tabtk

Toolkit for processing TAB-delimited format

test

RStudio_git test

transcriptome_ana

Record the process for transcriptome analysis, including codes.