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ads1-slides

Slides for Algorithms for DNA Sequencing Coursera class

ariba

Antimicrobial Resistance Identification By Assembly

artic-noro

babraham_intro_to_r

bacterial_wgs_training

In this training course you will find theory and practice material for introducing yourself to wgs analysis for bacterial, including outbreak investigation.

batchartemissraminer

batch virus discovery pipeline for the USYD HPC Artemis

bioinformatics_curriculum

:microscope: Path to a free self-taught education in Bioinformatics!

chewbbaca

BSR-Based Allele Calling Algorithm

cna_bacterial_wgs_training

In this training course you will find theory and practice material for introducing yourself to wgs analysis for foodborne bacteria

comp-genomics-class

Code and examples for JHU Computational Genomics class

courses

designing.ggplots

Install Workshop Materials for Designing ggplots

dockerfiles

ena-fast-download

Download FASTQ files of reads from the European Nucleotide Archive (ENA)

ggplot2

An implementation of the Grammar of Graphics in R

github-slideshow

A robot powered training repository :robot:

hello-world

trying to figure out github

hivminion

Pipeline for the analysis of HIV amplicons with MinION sequencing

introduction_to_bioinformatics

In this training course you will find theory and practice material for introducing yourself to the basics of high throughput sequencing data analysis.

learning-bioinformatics-at-home

resources for learning bioinformatics

nanosim

Nanopore sequence read simulator

poretools

a toolkit for working with Oxford nanopore data

roary

Rapid large-scale prokaryote pan genome analysis

rstatistics_learn

rvdb

A reference viral database (RVDB)

sequenceng

An interactive learning resource for next-generation sequencing (NGS) techniques

test

Trial1

unifesp_ntm_newspecies-nf

Paper "Description of new species of Mycobacterium terrae complex isolated from sewage at the São Paulo Zoological Park Foundation in Brazil"

v-pipe

V-pipe is a pipeline designed for analysing NGS data of short viral genomes

wub

Tools and software library developed by the ONT Applications group