Examples are not working about geometricflux.jl HOT 10 CLOSED

It seems error occurs at loading data.
Could you please check if you have MLDatasets installed?

from geometricflux.jl.

Yes, MLDatasets is installed.

from geometricflux.jl.

Is it using MLDatasets successfully? It's kind of weird and should don't raise error. I tested it on my computer and it got passed.
What's MLDatasets version in your side?

from geometricflux.jl.

Could you reproduce this?

julia> using MLDatasets

julia> cora = Cora()
dataset Cora:
  metadata    =>    Dict{String, Any} with 3 entries
  graphs      =>    1-element Vector{MLDatasets.Graph}

julia> cora[1]
Graph:
  num_nodes   =>    2708
  num_edges   =>    10556
  edge_index  =>    ("10556-element Vector{Int64}", "10556-element Vector{Int64}")
  node_data   =>    (features = "1433×2708 Matrix{Float32}", targets = "2708-element Vector{Int64}", train_mask = "140-trues BitVector", val_mask = "500-trues BitVector", test_mask = "1000-trues BitVector")
  edge_data   =>    nothing

julia> @which cora[1]
getindex(d::Cora, i) in MLDatasets at /home/yuehhua/.julia/packages/MLDatasets/eZ0Va/src/datasets/graphs/cora.jl:64

from geometricflux.jl.

I am using MLDatasets v0.5.15. Here is the trace:

julia> using MLDatasets

julia> cora = Cora()
ERROR: MethodError: objects of type Module are not callable
Stacktrace:
 [1] top-level scope
   @ REPL[2]:1

from geometricflux.jl.

The latest version is MLDatasets v0.7.4. Could you update to this version?

from geometricflux.jl.

I have updated the packages, still getting the same error.

My packages:

  [052768ef] CUDA v3.12.0
  [587475ba] Flux v0.13.6
⌃ [7e08b658] GeometricFlux v0.13.4
  [3ebe565e] GraphSignals v0.7.3
⌃ [86223c79] Graphs v1.7.3
  [eb30cadb] MLDatasets v0.7.4
  [d96e819e] Parameters v0.12.3
  [92933f4c] ProgressMeter v1.7.2
  [10745b16] Statistics

Trace:

ERROR: LoadError: MethodError: no method matching getindex(::Cora, ::Int64)
Stacktrace:
 [1] load_data(dataset::Cora, batch_size::Int64, train_repeats::Int64, test_repeats::Int64) (repeats 2 times)
   @ Main /GCN.jl:16
 [2] train(; kws::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
   @ Main /GCN.jl:73
 [3] train()
   @ Main /GCN.jl:57
 [4] top-level scope
   @  /GCN.jl:116
in expression starting at /GCN.jl:116

from geometricflux.jl.

Maybe you could fire an issue to MLDatasets since the error comes from MLDatasets.

from geometricflux.jl.

Hi @kaansancak Updating GeometricFlux to the latest version 0.13.7 solves the issue. The 0.13.4 version is not using MLDatasets.jl. Reproduce:

(tmp.V2PSqe1wQb) pkg> add [email protected]
.
.
.
julia> @which Cora()
Cora() in GraphMLDatasets at /home/deebyo/.julia/packages/GraphMLDatasets/nsi8O/src/dataset.jl:41

You can update all the packages using using Pkg; Pkg.update(). If you cannot use the current version of GeometricFlux.jl use a temporary environment . Hope it solves the issue.

from geometricflux.jl.

Hi @kaansancak Updating GeometricFlux to the latest version 0.13.7 solves the issue. The 0.13.4 version is not using MLDatasets.jl. Reproduce:

(tmp.V2PSqe1wQb) pkg> add [email protected]
.
.
.
julia> @which Cora()
Cora() in GraphMLDatasets at /home/deebyo/.julia/packages/GraphMLDatasets/nsi8O/src/dataset.jl:41

You can update all the packages using using Pkg; Pkg.update(). If you cannot use the current version of GeometricFlux.jl use a temporary environment . Hope it solves the issue.

This solved the issue, thank you!

from geometricflux.jl.