Name: Florent Lassalle
Type: User
Company: Wellcome Sanger Institute @sanger
Bio: Currently post-doctoral fellow at the Wellcome Sanger Institute and honorary researcher at Imperial College London, Dept. of Infectious Disease Epidemiology
Location: United Kingdom
Blog: http://www.imperial.ac.uk/people/f.lassalle
Florent Lassalle's Projects
Python modules and scripts for the construction of Agrogenom database
some material for bioinfromatics training
pipeline and reference protein sequence data for generating core-proteome alignment of Rhizobiaceae genomes
Python module for simulation of forward evolution of a prokaryotic(-like) pangenome
R module and script for the analysis of aligned biological sequences, mainly to perform genome-wide scan for the detection of hotspots of diversity, LD, etc.
suite of scripts and modules for parsing output from metagenomic classification softwares, including Krona graphs
a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome
miscellaneous bioinformatics scripts
Python modules for manipulating rooted phylogenetic trees
Supporting data and scripts for paper on the Yemen cholera outbreak in 2018-2019