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ants

Advanced Normalization Tools (ANTs)

bravo

The Brain Recording Analysis and Visualization Online Platform

bravo_ssr

c3d

Convert3D tool

dcm2niix

dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC

imagevisualization3d

mrtrix3

MRtrix3 provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), probabilistic tractography, track-density imaging, and apparent fibre density

picsl_malf

Updated code from project https://www.nitrc.org/projects/picsl_malf/ Imported from: https://www.nitrc.org/frs/?group_id=634

publication-scripts

python-scripts

scirun

SCIRun is a Problem Solving Environment, for modeling, simulation and visualization of scientific problems. This is version 5, the upgraded version of SCIRun v4.

seg3d

Seg3D is a free volume segmentation and processing tool developed by the NIH Center for Integrative Biomedical Computing at the University of Utah Scientific Computing and Imaging (SCI) Institute.

simnibs

Simulation of Non-Invasive Brain Stimulation

slicer

Multi-platform, free open source software for visualization and image computing.

thomas_new

Segmentation of the thalamus into 11 nuclei and MTT using white-matter-nulled MPRAGE MRI image contrast with support now for standard MPRAGE also (Version 2.1)

tutorials

Host a series of tutorials and guidelines for future software development in Fixel Institute

visualaudioevokedparadigm