Federico Comoglio's Projects
This repository contains best profile readme's for your reference.
Selected courses in mathematics, statistics and data science I found particularly useful and well-structured.
Scripts and presentation as introduction to R for the Systems Biology course, HS 2013, D-BSSE, ETH Zurich
This Snakemake pipeline implements the GATK best-practices workflow
An R package for absolute quantification under uncertainty. dupiR implements a Bayesian approach using a binomial likelihood and non-conjugate, discrete uniform priors under sampling with or without replacement.
Personal repo to add README.md to GitHub profile
Personal website
A parser from MEME XML output to R
Code used in Leemans et al 2019: "Promoter-intrinsic and local chromatin features determine gene repression in LADs"
An R package for the topological analysis of knotted 3D structures (with a focus on biological polymers)
R Interface to SymPy Computer Algebra System
Transfer learning with pre-trained deep CNNs to predict cell mechanisms of action in response to drug perturbations. See Kensert et al. 2018 biorXiv
An R/BioC package implementing a statistical and computational framework for the identification of RNA-protein interaction sites in PAR-CLIP data.