fawaz-dabbaghieh Goto Github PK
Name: Fawaz Dabbaghie
Type: User
Company: HHU/UKD
Bio: PhD students in Bioinformatics. Mostly working with graphs and pangenomes
Location: Düsseldorf, Germany
Fawaz Dabbaghie's Projects
academicpages.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
batch_effects_shiny_app
A Shiny app that installs epigenomic data from DeepBlue and allows the user to run batch effect analysis on it
bubble_gun
cobsi_index_download
Generating an information table and downloading files from the COBSI index
dsb-meeting.github.io
Web site for dsb meetings
fawaz-dabbaghieh.github.io
gfa_subgraphs
Extracts subgraphs or components from a graph in GFA format
kmer-counter
Count kmers with a more efficient (faster) hash table
metadata_fixer
a semi-automated pipeline for fixing metadata related from experiments
msa_to_gfa
Small python program to turn MSA to GFA v1 with paths of original sequences
panpa
PanPA is a tool for building panproteome graphs and aligning sequences back to the graphs.
panpa-rtd
Read the docs for PanPA
smith_waterman_cython
A test implementation of Smith Waterman algorithm with Cython
theupsetkmer
Create Upset diagrams from k-mer sets
vapid
VAPiD: Viral Annotation and Identification Pipeline
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