fatemehpouryahya Goto Github PK

alphafold

Open source code for AlphaFold.

autodock-vina

AutoDock Vina

composer

Supercharge Your Model Training

csc2541_ppi

deepspeed

DeepSpeed is a deep learning optimization library that makes distributed training and inference easy, efficient, and effective.

depmap_omics

What you need to process the Quarterly DepMap-Omics releases from Terra

dgraphdta

a novel DTA predition method using graph neural network

dlkcat

Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic models (ecGEMs) reconstruction

ece1512_2022w_projectrepo_fatemehpouryahya

Visual Interpretation of Convolutional Neural Networks

esm

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

foldingdiff

Diffusion models of protein structure; trigonometry and attention are all you need!

foldseek

Foldseek enables fast and sensitive comparisons of large structure sets.

gfaffix

GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.

human-gem

The generic genome-scale metabolic model of Homo sapiens

igfold

Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies

latent-diffusion

High-Resolution Image Synthesis with Latent Diffusion Models

misato-dataset

mmseqs2

MMseqs2: ultra fast and sensitive search and clustering suite

mutdta

Improving the precision oncology pipeline by providing binding affinity purtubations predictions on a pirori identified cancer driver genes.

mvfa-ad

[CVPR2024] Adapting Visual-Language Models for Generalizable Anomaly Detection in Medical Images

omegafold

OmegaFold Release Code

openfold

Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

paper16-scode

A cytoscape-based plug-in for identifying protein-complex group from Protein Interaction Graph

parquet-format

Apache Parquet

peripheral_structures

Peripheral structures in unlabelled trees and the accumulation of subgenomes

pggb

the pangenome graph builder

ppimapbuilder

Cytoscape 3.0 app. Generation of protein-protein interaction network with prediction using protein orthology

profile-hmm

pso-jax

An accelerated Particle Swarm Optimization tool that uses JAX key component

ray

Ray is a unified framework for scaling AI and Python applications. Ray consists of a core distributed runtime and a set of AI Libraries for accelerating ML workloads.