Comments (4)
awatson1978
commented on June 18, 2024
1
Awesome. I'll start with documenting the config options then. I've got a final project in my Genomics class due on the 15th; so expect something between now and then.
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eweitz
commented on June 18, 2024
@awatson1978, I am indeed open to accept pull requests, including for documentation.
A prime goal of mine with Ideogram has been to make usage on a web page as simple as possible. Per #70 it sounds like you're using Ideogram with Meteor and React. Those are important web contexts, and I'm sure your notes would be helpful!
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eweitz
commented on June 18, 2024
@awatson1978, some documentation has been added to the README since we discussed this. I am starting more detailed configuration and API documentation now. I'll note here when that's done!
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eweitz
commented on June 18, 2024
See the new Ideogram API reference for documentation on configuration options and methods. Pull requests to improve that are welcome.
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Related Issues (20)
- API annotations not working on genomes with non "1,2,3" labelled chromosomes HOT 1
- Is there a limit to the number of keys in the legend? HOT 2
- Issue with custom organism bandfiles
- Display annotation track from a BED file HOT 8
- Support T2T human genome HOT 2
- Support gzipped BED files HOT 1
- Support for structural rearrangements HOT 4
- Histogram support for bedgraph format HOT 2
- 404 (Not Found) HOT 1
- Karyotype file of dual comparison error HOT 3
- Jupyter Notebook example no longer works HOT 5
- Chromosome disappears after being clicked for some organisms HOT 3
- Is there a way to zoom in or out ideograms to check overlapped annotations? HOT 2
- rangeSet does not support sex chromosomes HOT 4
- where is detailed documentation/wiki? HOT 1
- Two annotations layouts combined: overlaid + histogram HOT 2
- Annoatation with multiple tracks
- Histogram with tooltip? HOT 2
- Missing regions in fly ideogram? HOT 4
- Help with Uploading a Bed file instead of a URL link HOT 6
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