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haubold avatar haubold commented on August 21, 2024

I'm not an expert on docker, but as far as I know, a docker container does no allow direct access to the surrounding file system. However, you can copy to and from a running container. To do so, find the id of the container you'd like to target, by executing on the host system

docker ps

Say this is 5486ac5100aa, then copy from the host system to the appropriate directory inside the container.

docker cp neighbors_mplutonius 5486ac5100aa:/home/jdoe/
docker cp target_mplutonius 5486ac5100aa:/home/jdoe/

Inside the container you can now to run the fur analysis.

makeFurDb -t target_mplutonius -n neighbors_mplutonius -d mplutonius.db
fur -d mplutonius.db

Hope this helps.

from fur.

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