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aisynphys

Analysis tools specific to the aiephys multipatch project.

autocage

System for fully autonomous home-cage mouse behavioral and optogenetic experiments

autonomouse-control

AutonoMouse system control and PyQt5 control GUI. Animal database / schedule ordering / experiment monitoring.

autopilot

Distributed behavioral experiments

awesome-neuroscience

A curated list of awesome neuroscience libraries, software and any content related to the domain.

aziz

Tangent Audio AZIZ - LED Ring Light - Firmware and Hardware Design

bioamp

BioAmp is an opensource project of a multichannel biopotential adquisition system for EEG, EMG, EOG and EOG signals.

biotracker_core

Video Tracking Framework for the Analysis of Animal Behavior - Core Component

bonsai.openni

A Bonsai library for interfacing with depth cameras through OpenNI.

bonzeb

boris

Behavioral Observation Research Interactive Software

camera_control

a Python API to record video & system timestamps from Imaging Source USB cameras

case-studies-kramer-eden

Code and data for the book "Case Studies in Neural Data Analysis"

cellfinder

Automated 3D cell detection and registration of whole-brain images

cellpose

a generalist algorithm for cellular segmentation

cerebro

System for wireless optogenetic stimulation

chronux

Open-source software for neural data analysis (v2.10)

ciatah

CIAtah (pronounced cheetah, formerly calciumImagingAnalysis [ciapkg]): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: https://git.io/ciatah_docs.

cnmf_e

Constrained Nonnegative Matrix Factorization for microEndoscopic data

cogs118c

COGS118C [Neural Signal Processing] @ UCSanDiego

course-content

Summer course content for Neuromatch Academy

craniobotcourier

A HMI for the Craniobot Microsurgical Platform Developed by the Bio-Sensing and Bio-Robotics Laboratory at the University of Minnesota - Twin Cities

deepbehavior

deepinsight

A general framework for interpreting wide-band neural activity

deeplabcut

Markerless pose estimation of user-defined features with deep learning for all animals including humans

deeplabcut-live

SDK for running DeepLabCut on a live video stream

deeplabstream

Closed-loop behavioral experiment toolkit using pose estimation of body parts.

deepposekit

a toolkit for pose estimation using deep learning

deepsqueak

DeepSqueak: A Deep Learning Based System for Quantification of Ultrasonic Vocalizations

elabftw

:notebook: eLabFTW is the most popular open source electronic lab notebook for research labs.