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caterpy

This is an analysis package made for the application of spectral decompositions for dimensionality reduction on Python

cookiecutter-data-science

A logical, reasonably standardized, but flexible project structure for doing and sharing data science work.

cosyne2023_posters

cosyne2024

decisionmakingdynamics

Code used in the Chandrasekaran Lab to analyze the population activity of neurons recorded from prefrontal cortex in NHP's performing decision-making tasks

deeplabcut

Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans

erickenjilee.github.io

Sometimes neuroscience. Sometimes math. Sometimes data science. Always my thoughts!

eye-tracking-poster---sfn2017

This is the final version of the poster "The Incorporation and Uses of Eye Tracking in a Large-Scale Pipeline for the Allen Brain Observatory " presented at SfN 2017

flexcat-spiking

Flexible categorization dynamics in spiking neural networks of perceptual decision making

fnn

Embed strange attractors using a regularizer for autoencoders

grs2022_nbc_poster

Poster for the Gordon Research Symposium - Neurobiology of Cognition conference in 2022

hva_classifier

HVA classification for AMATH 582

imgprep

[imgprep] image preparation python script for my microscopy workflow

lif_stochastic

code associated with "Dynamics of stochastic integrate-and-fire networks"

linearmodelslab

This is the repo for our linear models lab looking at bike data

photoinhibitioncharaterization

Photoinhibition Charaterization Paper, Li et al 2019

phy_debug

phy: interactive visualization and manual spike sorting of large-scale ephys data

physmap_manuscript

This repo is provided for the reproduction of figures and analyses found in the manuscript Lee et al. 2024, bioRxiv. It should be useful for both reviewers and interested researchers.

pymssa

Python implementation of Multivariate Singular Spectrum Analysis (MSSA)

python-neo

Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology file formats

pywnn

Weighted Nearest Neighbors Analysis implemented in Python (pyWNN)

sfn2022_poster

sfnglobalconnectome2021

shap

A game theoretic approach to explain the output of any machine learning model.

star_protocol_wavemap

umap-examples-mammoth-

wavemap

Nonlinear dimesionality reduction and graph community detection on waveforms.

wavemap_paper

This repo allows for the complete reproduction, from processed data, of all the main and supplemental figures in the manuscript Non-linear Dimensionality Reduction on Extracellular Waveforms Reveals Physiological, Functional, and Laminar Diversity in Premotor Cortex.