Comments (2)
BlackEdder
commented on June 19, 2024
I have addressed some of the problems with the contact matrix in #26 , but we need further changes in the code.
The cpp function will need to accept an r0 here:
Line 14 in f59f61a
Then
Line 27 in f59f61a
contact_matrix <- r0*contact_matrix / (max(Re(eigen(contact_matrix)$values)))The current issue is that by rescaling the contact matrix you basically set r0 to 1, which results in a final size close to 0
from finalsize.
pratikunterwegs
commented on June 19, 2024
This issue is fixed by #42
from finalsize.
Related Issues (20)
- Replace “Epiverse Initiative” by “Epiverse-TRACE” in README
- Add a lifecycle badge HOT 1
- Add contributor details HOT 3
- Test statistical correctness for no-between group contacts
- Release finalsize 0.2.0 HOT 2
- rename r_eff() function title
- rename the r0_to_lambda() function title HOT 1
- Add DPG badge
- Use LMIC examples in vignettes
- Describe the underlying maths and numerical implementations in vignette HOT 6
- Correct link to heterogeneous contacts vignette
- Easy route to homogenous estimate HOT 4
- Update package infrastucture files
- Temporarily disable backport linter HOT 2
- End of year cleanup
- Update site with epiversetheme HOT 1
- `final_size()` should accept a vector of R0 HOT 12
- Add a continuous benchmarking workflow
- Show new vignettes on release website HOT 1
- Release finalsize 0.2.1
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