Comments (9)
Do you mean installing {epidemics} on Windows?
Yes
I would rather do docs as code and include installation instructions in the Readme or in a vignette.
That should be fine too. Was only providing one suggestion.
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Here's my session info:
> sessionInfo()
R version 4.3.0 (2023-04-21)
Platform: aarch64-apple-darwin20 (64-bit)
Running under: macOS Ventura 13.4
Matrix products: default
BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/lib/libRlapack.dylib; LAPACK version 3.11.0
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
time zone: Europe/London
tzcode source: internal
attached base packages:
[1] stats graphics grDevices utils datasets methods base
from epidemics.
Thanks - I'll take a look to see whether throwing the current state on to Rhub flags any problems, that might help diagnose the issue.
from epidemics.
This issue has been fixed here stan-dev/cmdstanr#790 as it was more broadly an issue with my computer not being able to install packages from source because of a broken toolchain. Hope this helps someone else later on.
The issue can be closed now.
from epidemics.
Thanks for following up @jamesmbaazam - I'll re-add the Discussion tag and add a 'known-issue' tag as well, and keep this open for future reference.
from epidemics.
It might also help to set up an installation wiki OR point to those in other places, for example, rstan. I was contacted by someone last week about installing this package on Windows and it turned out their issue was that {rtools} wasn't on their path.
from epidemics.
Do you mean installing {epidemics} on Windows?
I would rather do docs as code and include installation instructions in the Readme or in a vignette.
from epidemics.
Thanks, I'll open an issue for this. Would you or the person who asked about Windows installation be able to provide a reprex or more details about the Rtools issue? Or any other issues that I could cover in the installation guide?
from epidemics.
That was Hikaru. I doubt the issue can be reprex'd as it was a path issue and has been resolved. More broadly, the instruction for Windows users should be for them to ensure they have {Rtools} installed and added to the system path. Something along the lines of the instruction in the rstan wiki.
from epidemics.
Related Issues (20)
- Update Readme with Li et al. reference for ebola
- Model functions take model-specific parameters/arguments HOT 1
- Error when installing `epidemics` HOT 8
- R0 vs Reff in vignettes HOT 5
- Threshold for validating a population object. HOT 3
- Unable to install on MacOS Ventura HOT 9
- Fix vaccination rates in vignette
- A few remarks HOT 3
- `intervention()` function returns an extra element that comes as an empty string `""` HOT 2
- Should `population()` have default values? HOT 1
- Calculate expected vaccinations and check model correctness HOT 3
- Add function to calculate timing and size of epidemic peak HOT 1
- Remove <infection> class
- Ebola model should be compatible with interventions
- Object print methods
- PDF documentation rendering fails on r-universe HOT 1
- Add initial diphtheria model
- Restructure Vacamole model for rate interventions
- Vignette labelling HOT 1
- End of year cleanup
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