Comments (1)
I think this is due to incompatible genomes (bam versus what caper is using)
from caper.
Related Issues (20)
- intermediate file
- idr threshold HOT 1
- pyyaml error when create_instance.sh HOT 3
- Changing `gcp-out-dir` when using `caper submit` HOT 1
- Unable to write file due to disk space despite there being sufficient disk space via docker HOT 3
- Failed on test data -- make_conf.py not found
- caper init slurm not working HOT 6
- Newer cromwell versions HOT 2
- changes to sge_resource_param in config file don't make it through to backend.conf HOT 2
- Missing `engine` in gcs configuration HOT 1
- cromwell works, caper doesn't
- Relative paths to data files are not accessible by Singularity containers HOT 4
- Normalization
- Error when specifying --slurm-leader-job-resource-param HOT 1
- apptainer HOT 1
- LSF job parameter error HOT 3
- .caper_tmp slowly eating up space HOT 1
- caper halted
- Cannot run on lsf system, not sure if exit code 127 is the reason HOT 6
- Consider increasing minimum requirement of PyYAML to 6.0.1 HOT 2
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