BUG | do_LigandReceptorPlot() |"arrange_interactions_by = both" implementation about scpubr HOT 1 CLOSED

Hi @RMOsborn012,

Thanks a lot for using my package! I am happy to see that it is useful for your work!

Indeed, you have a point there.

I have modified the source code so that interactions are sorted by any of the following modes:

• Specificity.
• Magnitude.
• Specificity, then magnitude.
• Magnitude, then specificity.
• Specificity and magnitude with equal weights (your suggestion).

I was not able to achieve the result you suggested with your suggested code, but I managed in the end by ordering the tibble based on the specificity, store the order in a column, perform the same for magnitude, and then order the final tibble in ascending order based on the sum of the orders for the two columns (so that interactions that ranked high in both magnitude and specificity will have a lower number than lower ranked ones in any of the two columns).

The changes will roll out with update v2.0.0. It might take a while until this happens though. If you really want to use it now, you can always download the commit where I have added this using:

devtools::install_github("enblacar/SCpubr", ref = "fd203b0")
# Reload R Session
detach("package:SCpubr")
library(SCpubr)

Be mindful that I am still working in the update, so things might still break. Plus, it is a major update, so many functions have changed and parameters have been renamed.

Hope this helps!
Enrique

from scpubr.