emreerhan Goto Github PK

brew

🍺 The missing package manager for macOS (or Linux)

classroom

Content for running instances of STAT 545/547M at UBC

cv_homology_matching

docker-imgs

A repository to store all the docker images used in flowcraft

emreerhan.github.io

flowcraft

A Nextflow pipeline assembler for genomics :whale::package:

homebrew-bio

:beer::microscope: Bioinformatics formulae for the Homebrew and Linuxbrew package managers

homebrew-science

:snowflake: Scientific formulae for Homebrew and Linuxbrew (legacy)

kaggle_bowl

kmer-optimization

Notebooks and scripts for building a generative model to describe expected unitigs for a given sequencing read set

modular-assembly-hs18

Mix and match modular genome assembler components

pandas_workshop

Built-in data structures in Python are insufficient for data analysis. This workshop introduces Pandas, a Python library that facilitates efficient and simple data analysis with easy-to-use data structures. I will assume you're at least at a beginner level in Python. Please come with Anaconda for Python 3.6 installed (https://www.anaconda.com/download/).

portal_client

Python-based client for downloading data made available through portals powered by the GDC-based portal system..

random_forest_workshop

Machine learning classifiers are a powerful tool for determining to which category novel data belongs given some training data. This workshop explores the basics of using the scikit-learn Python library with some toy cancer datasets.

scikit-learn

scikit-learn: machine learning in Python

serratus

Ultra-deep Coronavirus Homology Search

spaced-seeds

Scripts to empirically show how spaced seed entropy is related to their sensitivity for homology search.

stat540-ubc.github.io

Public repository of STAT540@University of British Columbia. Statistical Methods for High Dimensional Biology

stat545_participation

A respository for recording my classroom participation for STAT545 at UBC

stlfr2supernova_pipeline

A pipeline to de novo assemble the stLFR reads using Supernova Assembler

tarpaulin

📈 GitHub Action for code coverage reporting with tarpaulin