Copyright (C) 2018 Léauté Ludovic
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This file is part of NeOmics project
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This project is free: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
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This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of RCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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GNU General Public License for more details.
download neo4j communtity edition
- neo4j (v3.1.1): download neo4j at https://neo4j.com/download/community-edition/
open your terminal and run the following command:
- systemctl {start|stop|restart} neo4j
You might now have access to the local interface running on port 7474. To see the interface, open a web browser at the adress http://localhost:7474 If it is your first connexion enter your knew neo4j's username and password (and remember it)
install the neo4j-python managing package py2neo :
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python get-pip.py (if pip not already installed)
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pip install py2neo
- python3 graph_base.py neo4j data/GSE7631_loc.csv
- python3 graph_goi.py neo4j data/P_GOI.txt
- python3 graph_tf.py neo4j data/P_TF_LABEL.txt
- python3 graph_ppi.py neo4j data/P_PPI.txt (Long process)
- python3 graph_kmeans.py neo4j data/kmeans_5 KMEANS5 (OPTIONAL)