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4magnus

Some scripts to help magnus with his sequences

aliceflow

NextFlow framework to streamline the Genalice variant call pipeline

bestpracticesworkshop

Repository for the workshop "Best practices on development"

borgstrom

python course ...

charter

dbs_analysis

fatemapping

file_tracker

Just for fun file tracker.

fragplot

Python script to plot fragment sizes from two csv files (minIon and fragmentanalyzer).

ga_16_14.10x_chromium_evaluation

GA_16_14.10X_Chromium_evaluation

javatest

Ignore this as it's just for testing stuff

oskar_web

polyg_calling

A set of python scripts that call lengths of G/C homopolymers in aligned illumina reads. Takes a bamfile with aligned reads and custom format list of homopolymer regions as input.

python_koans

Python Koans - Learn Python through TDD

rawdatadistribution

Small script to quickly plot the spatial distribution of raw data from fastq files.

scripts

Some scripts that I use now and then.

seaseq

Script for analysis of SEAseq data

seqcappg

singlecell_genome_analysis

singlefatcellexomeanalysis

slideshow-screensaver

Simple slideshow screensaver implemented with Python 2.7 and Pygame

st_analysis

A toolkit for visualisation and analysis of Spatial Transcriptomics datasets

st_pipeline

ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method in FASTQ format.

st_spot_detector

A web tool to do automatic spots detections and positional adjustments for ST Datasets.

taggd

Genetic barcode demultiplexing

tcr

A pipe for extracting TCRs from RNAseq data.

test_0

Description

try_git

twotaggingscripts

vcf_comparison_september_2016