Elgin Akin's Projects
Fast and accurate in silico inference of HLA genotypes from RNA-seq
Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE
high level tutorial for generating and plotting time-resolved phylogenetic trees for influenza surveillance
This is a flipbook that builds up plots with ggplot2.
H1N1 HA Tree Build from all GISAID sequences between 2015 and 2023
Easy installation for INSaFLU made by docker
Course website for Johns Hopkins BSPH Statistical Computing (Biostatistics 140.776) in Fall 2022
k's eta
A cheat sheet for Markdown
Influenza genome analysis Nextflow workflow
topper as a tsne
An Influenza genome sorting toolkit built in python
Space to explore the rayshader package
RNA2HLA is a QC tool performing study-wide HLA typing for RNA-seq data (paired on single-end) and thereby identifying the samples from the common source.
A collection of documented examples using TreeTime
Build a consensus sequence from a VCF and reference sequence masking low and no coverage positions
vSNP -- validate SNPs