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assembly_sv_calling_evaluation

bioconda-recipes

Conda recipes for the bioconda channel.

hal2vg

Convert HAL to VG

igenvar

The official repository for the iGenVar project.

pac_bam_scan

pibeta

real_sv_calling_evaluation

A snakemake pipeline for SV calling evaluation from long read sequencing

seqan

SeqAn's official repository.

seqan3

The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

sshmm

ssHMM is an RNA motif finder. It recovers sequence-structure motifs from RNA-binding protein data, such as CLIP-Seq data.

sv-benchmark

Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data

svim

Structural Variant Identification Method using Long Reads

svim-asm

Structural Variant Identification Method using Genome Assemblies

sviper

Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.

vcflib

a simple C++ library for parsing and manipulating VCF files, + many command-line utilities

vg

tools for working with genome variation graphs

wgasv

Scripts for studying SVs via graphs constructed from whole-genome-alignment

yeast_sv

Pipelines for SV genotyping using vgteam/vg on 12 yeast strains