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brain_states

Code to reproduce analysis for "Temporal sequences of brain activity at rest are constrained by white matter structure and modulated by cognitive demands"

cbig

cceps_single_trials

Code to reproduce analysis for Cornblath et al. 2022 "Quantifying trial-by-trial variability during cortico-cortical evoked potential mapping of epileptic networks"

cleanbib

Probabilistically assign gender proportions of first/last authors pairs in bibliography entries

connectome_diffusion

Code to reproduce all network modeling analyses for Henderson et al. 2019 ("Spread of α-synuclein pathology through the brain connectome is modulated by selective vulnerability and predicted by network analysis").

fir_pca_22q

gbavspbsdiffusion

Code to perform all analyses for Henderson et al. 2019

gitignore

A collection of useful .gitignore templates

latex_tools

Tools that automatically edit latex files for scientific publications.

matlab-toolboxes

Contains all my Matlab toolboxes.

mouse_abi_tool

Tool to pull gene expression from Allen Brain Institute API in same annotation space as structural connectome.

neuropathcluster

Code to reproduce all analyses for "Defining and predicting transdiagnostic categories of neurodegenerative disease"

tau-spread

tutorial1