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Ed Harry's Projects

biopython icon biopython

Official git repository for Biopython (originally converted from CVS)

bwa-mem2 icon bwa-mem2

The next version of bwa-mem (WIP; not recommended for production uses at the moment)

edharry icon edharry

Config files for my GitHub profile.

ema icon ema

Fast & accurate alignment of barcoded short-reads

hapcut2 icon hapcut2

software tools for haplotype assembly from sequence data

haplotagging icon haplotagging

Code and binaries related to processing haplotagging data

salsa icon salsa

SALSA: A tool to scaffold long read assemblies with Hi-C data

supersimpleimageformater icon supersimpleimageformater

Converts Biological Image Formats (using the OME Bioformats package) to a Simple Format for Further Processing

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