Using with Phylip about vcf2phylip HOT 2 CLOSED

Hello @mayasheth ,
In the README (https://github.com/edgardomortiz/vcf2phylip) I detail the output formats you can get. However I will specify that the PHYLIP format produced is the "relaxed" version. Honestly I never worked with the package PHYLIP, although they created the PHYLIP format (which is now used by many other phylogenetic programs).
Reading the documentation of Phylip (http://evolution.genetics.washington.edu/phylip/doc/main.html#inputfiles) I can tell the format my script produces is correct however there is a limitation for the strict Phylip format, the names of the samples must be exactly 10 characters long, you can try renaming your samples and running my script again. I could make my script to truncate the names to 10 characters but this may create non-unique names.

Let me know if this works.

Edgardo

from vcf2phylip.

Please re-open the issue if problem persists, closing this now.

from vcf2phylip.