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arc-theme

A flat theme with transparent elements (actively maintained fork)

bash_kernel

A bash kernel for IPython

bioalg

coding problems for bioinformatics algorithms I

biodata

A short workshop for my labmates on working with genomic data

cel-seq-pipeline

fasolr

A fork of gtk-3.0/gnome-shell Evolve theme by Satyajiit Sahoo using Solarized colors

fast-iclip

Fully Automated and Standardized (FAST) iCLIP analysis pipeline.

fpop

gnome-terminal-colors-solarized

Solarized Gnome Terminal colors, based on http://ethanschoonover.com/solarized

is-032

ChIP-Seq analyses for IS-032 NextSeq run

jupyter-themer

Apply custom CSS styling to your jupyter notebooks

jupyterlab-theme-solarized-light

JupyterLab Theme Solarized Light

jupyterlab_solarized_light

keds

Python pipeline for SHAPE-SEQ data analysis

labtunnel

Manage ssh tunnels with systemd. Most useful when you neet to maintain an always-up connection to a lab/work computer.

net_analysis

Analysis scripts for NET-Seq

ngs

A frontend to the output of tophat/cufflinks pipeline

ngs-cookiecutter

A template for NGS projects

nlabpy

Genomic data parsing and visualization scripts

nlabseq

Scripts and utilities to initialize Jupyter notebook based templates for NGS data analysis.

nlpy

A collection of silly utility scripts

paper-gtk-theme

Official Paper theme source repository

plotnine

A grammar of graphics for Python

poretools

a toolkit for working with Oxford nanopore data

proscatter

pwrsolr

Awesome powerarrow theme with solarized colors (http://ethanschoonover.com/solarized)

pybedtools

Python wrapper -- and more -- for Aaron Quinlan's BEDTools (bioinformatics tools)

pyclonal

A Jupyter Notebook to analyze T-cell Receptor Sequencing

pyrnafold

An exploratory project to implement RNAtips algorithm using pandas

redclib

Red-C data processing