Comments (8)
Thanks @minxu74. Using system mpi4py
might be a possibility.
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@xylar and @minxu74 Thank you for taking a look! When I try it today, it worked. Must be some one time glitch yesterday.
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Okay, well that's a little disconcerting but hopefully it won't happen again. If it does, let's try to find out more. Using system mpi4py
, if there is such a thing, might be an option.
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Hmm, @chengzhuzhang, this seems way outside my wheelhouse. Is there someone from the E3SM team we could bring in for some help? I'm happy to change the build as needed but I don't know where to begin.
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Just to be sure, this was run on a compute node, not a login node?
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I should clarify that this ilamb run is from e3sm-unified on compute nodes.
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There is not a ilamb-run executable in e3sm-unified on a login node. I'm wondering maybe @minxu74 could help take a look.
To reproduce, get a compute node:
srun -N 1 -t 01:00:00 --pty bash
source /lcrc/soft/climate/e3sm-unified/load_latest_e3sm_unified_chrysalis.sh
export ILAMB_ROOT=/lcrc/group/e3sm/ac.zhang40/ilamb_data
ilamb-run --config /home/ac.zhang40/ILAMB/src/ILAMB/data/cmip.cfg --model_root /lcrc/group/e3sm/ac.zhang40/ilamb_test_data/ --regions global
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@chengzhuzhang could you try the following command to see if it works?
srun -n 1 ilamb-run --config /home/ac.zhang40/ILAMB/src/ILAMB/data/cmip.cfg --model_root /lcrc/group/e3sm/ac.zhang40/ilamb_test_data/ --regions global bona
If it does not work, we may have to use system mpi4py, instead of the one installed by conda.
I do not have an account on LCRC machines, otherwise, I can look into it and try the above command.
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Related Issues (20)
- Deploy to a new path on acme1 LLNL HOT 11
- python 3.7 version of e3sm-unified HOT 9
- Mac OSX build of e3sm-unified HOT 12
- e3sm-unified no longer supports high res analysis (cdf5 not supported) HOT 3
- Anvil/Blues is getting upgraded to slurm and LMod (yay!) HOT 1
- not able to add latest processflow and e3sm_unified versions HOT 1
- many packages in e3sm-unified are cobbering other packages HOT 1
- problem packages for e3sm-unified 1.2.6
- mpi4py on HPC HOT 6
- CI for building containers is currently broken HOT 2
- Enable better CI HOT 3
- e3sm_diags doesn't work in sysmpi environment HOT 1
- Build failing due to Dask dependency HOT 1
- v1.3.0 not building with numpy 1.18.1
- Change from acme to e3sm on NERSC HOT 2
- cdscan fails on grib control files HOT 27
- latest ncremap failed with vertical interpolation HOT 9
- slow on NERSC compute nodes HOT 7
- Tempest-extreme in e3sm-unified HOT 12
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