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Name: Yuxuan Yancey Du
Type: User
Company: University of Southern California
Bio: Ph.D. candidate in Bioinformatics [email protected] Stats/ML/Biology
Twitter: YuxuanDu3
Blog: yuxuandu.com
Name: Yuxuan Yancey Du
Type: User
Company: University of Southern California
Bio: Ph.D. candidate in Bioinformatics [email protected] Stats/ML/Biology
Twitter: YuxuanDu3
Blog: yuxuandu.com
:scroll: An up-to-date & curated list of awesome semi-supervised learning papers, methods & resources.
Bash 教程
Implementation of Bayesian NNs in Pytorch (https://arxiv.org/pdf/1703.02910.pdf) (With some help from https://github.com/Riashat/Deep-Bayesian-Active-Learning/))
Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.
Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes
Assessing the quality of metagenome-derived genome bins using machine learning
Implementing COP-Kmeans and PC-Kmeans
DeepDecon: A Deep-learning Method for Estimating Cell Fractions in Bulk RNA-seq Data with Applications to AM
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
glmmTMB
Random Forest model using Hellinger Distance as split criterion
HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps
HiCzin: Normalizing metagenomic Hi-C data and detecting spurious contacts using zero-inflated negative binomial regression
HiFine: integrating Hi-c-based and shotgun-based methods to reFine binning of metagenomic contigs
ImputeCC enhances integrative Hi-C-based metagenomic binning through constrained random-walk-based imputation
Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)
Meta Learning / Learning to Learn / One Shot Learning / Few Shot Learning
MetaCC allows scalable and integrative analyses of both long-read and short-read metagenomic Hi-C data
Metagenomic binning based on Hi-C data
MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis
MGCPY WILL NO LONGER BE UPDATED. THE NEW REPO CAN BE FOUND HERE:
A versatile pairwise aligner for genomic and spliced nucleotide sequences
Python toolbox for nonnegative matrix factorization
fast phage annotation program
:zap: :aquarius: Rapid prokaryotic genome annotation
A Variational Autoencoder (VAE) implemented in PyTorch
Instruction of reproducing results in ViralCC paper
The code of SCHAIN in the paper Semi-supervised Clustering in Attributed Heterogeneous Information Networks
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.