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clusterfast

ClusterFAST is a tool for finding translocation in next generation sequencing data

cnvkit-cbsmethod

Copy number variant detection from targeted DNA sequencing

convading_reload

Fork of the CoNVaDING software - Copy Number Variation Detection In NGS Gene panels was designed for small (single-exon) copy number variation (CNV) detection in high coverage NGS data

django-bootstrap4

Bootstrap 4 integration with Django.

ensembl

The Ensembl Core Perl API and SQL schema

ensembl-compara

The Ensembl Compara Perl API and SQL schema

ensembl-funcgen

Ensembl Funcgen Perl API and SQL schema

ensembl-rest-docker

This repo contains the code to dockerize a ensembl REST server on your own local machine. It allows the user to specify a different configuration to a locally hosted ensembl database and tweeking of the throtelling settings setup by default by ensembl for their own servers

ensembl-tools

Ensembl tools

ensembl-variation

The Ensembl Variation Perl API and SQL schema

matchclips2

paired end distance, split reads matching, read depth are used to detect and precisely locate structure variations

mosdepth

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

smash-paper

code for mapping and binning SMASH genomic data

solar_analysis

streamlit app for analysing solar output

wisexome