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applied-computational-genomics

Applied Computational Genomics Course at UU: Spring 2017

babelomics

choroplethr

choroplethr simplifies the creation of choropleths (thematic maps) in R

courses

Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1

datasciencespecialization

Data Science Specialization course on Coursera

diabetes-classification-demo

freebayes

Bayesian haplotype-based polymorphism discovery and genotyping.

frontend-task1

frontend-task2

frontend-task3

frontend-task5

gemini

a lightweight db framework for exploring genetic variation.

ggbiplot

A biplot based on ggplot2

hla-ngs-type

An HLA typing tool from NGS data

interminer

R package for InterMine

introtodatascience

GitHub Repository to accompany my YouTube series of videos on Introductory Data Science using R.

metaseq

Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data

mhc-prg

Population Reference Graphs for the HLA and MHC.

my-repository

this is my repository

nbpy

nbr

NBR: Network Based R-statistics for Mixed Effects Models

programmingassignment2

Repository for Programming Assignment 2 for R Programming on Coursera

pyhla

Python for HLA analysis: summary, association analysis, zygosity test and interaction test

rmassbank

Playground for experiments on the official http://bioconductor.org/packages/devel/bioc/html/RMassBank.html

samtools

Tools (written in C using htslib) for manipulating next-generation sequencing data

skills-github-pages

My clone repository