Error: 'miniconda_path' is not an exported object from 'namespace:reticulate' about giotto HOT 4 CLOSED

Hi,

Can you try to install the Giotto environment like installGiottoEnvironment(force_miniconda = TRUE) from a fresh R session? So without loading any other library (besided Giotto) or running a prior analysis. This should normally work.

If that works I can further try to figure out why you can not provide your own python path. That should normally work. Which reticulate version are you using?

from giotto.

Hi. I tried installGiottoEnvironment(force_miniconda = TRUE) from a fresh R session, but still get " Error: 'miniconda_path' is not an exported object from 'namespace:reticulate'"

packageVersion("reticulate")
[1] ‘1.13’

from giotto.

Ok, thanks for the feedback. I think it's related to the version of reticulate you're using. If you upgrade to the newest version it should work. I think anything > 1.15 should actually work. If this solves the issue, then I'll also update this in Giotto.

from giotto.

Hi. I updated reticulate to ‘1.18’ and it worked. Thanks for the suggestion!

from giotto.