Comments (1)
A BAM index should always be in the same location as the BAM file it's associated with. If your indices are ending up in an odd location then that's what should be fixed.
from methyldackel.
Related Issues (20)
- why cytosine_report output blank file?
- perRead output - print Bismark methylation call string? HOT 3
- Methylation profile for large genome organisms HOT 5
- Chromosomes effected by methylation HOT 4
- Stand output HOT 1
- Understanding --minConversionEfficiency argument HOT 1
- Genome browsing from MethylDackel bedGraphCpG file
- per-fragment methylation HOT 2
- mbias result is different between bismark and bwameth output HOT 1
- CURL_OPENSSL conflict with samtools HOT 3
- Installation failure: "bigWig.h: No such file or directory" HOT 1
- Clarification on definition of "unmethylated C" HOT 1
- Coverage of C sites HOT 1
- mbias HOT 1
- Does indel effect the methylation calling or C context determination HOT 1
- Positions in cytosine_report did not match the regions in providing bed file
- about M-bias HOT 1
- Could not repeat a CpG extraction with the same reference file and its index
- Mixed up reads within bam file
- How to index genome file for MethylDackel? HOT 1
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from methyldackel.