Comments (2)
dpryan79
commented on July 22, 2024
Hmm, there must be a buffer overflow somewhere. I try to use valgrind to catch these, but I must have missed one. Are you able to get any more information out of gdb regarding the exact line in mergeStrandMeth() that's causing the segfault? Which version of MethylDackel is this?
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bwlang
commented on July 22, 2024
sorry - i lost track of this one ...
maybe it's related to #73
both were using MethylDackel 0.3.0 (using HTSlib version 1.2.1)
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Related Issues (20)
- Understanding --minConversionEfficiency argument HOT 1
- Genome browsing from MethylDackel bedGraphCpG file
- per-fragment methylation HOT 2
- mbias result is different between bismark and bwameth output HOT 1
- CURL_OPENSSL conflict with samtools HOT 3
- Installation failure: "bigWig.h: No such file or directory" HOT 1
- Clarification on definition of "unmethylated C" HOT 1
- Coverage of C sites HOT 1
- mbias HOT 1
- Does indel effect the methylation calling or C context determination HOT 1
- Positions in cytosine_report did not match the regions in providing bed file
- about M-bias HOT 1
- Could not repeat a CpG extraction with the same reference file and its index
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- How to index genome file for MethylDackel? HOT 1
- Confused regarding CTOT, CTOB. Are there suggested values? HOT 3
- Issue running MethylDackel extract in parallel mode using minConversionEfficiency
- Question about minimum coverage
- Different CpG calls when using different regions of inclusion for Methyldackel extract
- Alignment trimming for Soft Clip reads?
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