Name: Kyle Drover
Type: User
Company: The Australian National University
Bio: PhD Candidate within the Arkell Group - John Curtin School of Medical Research (JCSMR)
Location: John Curtin School of Medical Research
Blog: https://jcsmr.anu.edu.au/people/students/mr-kyle-drover
Kyle Drover's Projects
Repository for Image Processing and Configuration Settings for Pydpiper Analysis for the Arkell Group
Code used within the Arkell lab that warps a provided single organ mask/label to orientated uCT scans of 12.5 dpc embryos and performs basic volume calculations
Detailed Information of methods used (including code), links to dataset and literature cited
radiomics standalone for BQ
A description of how to install and use Flashback Express Recorder
Converts Geneious annotations saved as a .csv file into a .BED formatted tsv file. Code will only work from directories within the Arkell Lab network.
Honours thesis completed within the Arkell laboratory 2018.
Automatic phenotyping tool for 3D images
Version 2 of the minc-toolkit, uses tools based on ITK version 4.x
Code developed within the Arkell laboratory to simulate various breeding scenarios within the Australian National University
MONAI Label is an intelligent open source image labeling and learning tool.
SNP_Analysis
Python code for flexible pipeline control
3D U-Net model for volumetric semantic segmentation written in pytorch
Top secret for Happy Hour
Volumetric viewer
Files used to determine the optimal sgRNAs for CRISPR-Cpf1 mutagenesis to exclude the ARE or introduce one of the six HPE SNVs
Files used in determining the presence of a SINE element within the ZIC2 3'UTR