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Kyle Drover's Projects

ark_pydpiper icon ark_pydpiper

Repository for Image Processing and Configuration Settings for Pydpiper Analysis for the Arkell Group

ark_vol_warper_v1 icon ark_vol_warper_v1

Code used within the Arkell lab that warps a provided single organ mask/label to orientated uCT scans of 12.5 dpc embryos and performs basic volume calculations

lama icon lama

Automatic phenotyping tool for 3D images

misimulator icon misimulator

Code developed within the Arkell laboratory to simulate various breeding scenarios within the Australian National University

monailabel icon monailabel

MONAI Label is an intelligent open source image labeling and learning tool.

pydpiper icon pydpiper

Python code for flexible pipeline control

pytorch-3dunet icon pytorch-3dunet

3D U-Net model for volumetric semantic segmentation written in pytorch

zic2-3-utr-crispr-cpf1 icon zic2-3-utr-crispr-cpf1

Files used to determine the optimal sgRNAs for CRISPR-Cpf1 mutagenesis to exclude the ARE or introduce one of the six HPE SNVs

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