donnerlab Goto Github PK

2014_pnas

This is the analysis code from de Gee JW, Knapen T & Donner TH. 2014. Decision-related pupil dilation reflects upcoming choice and individual bias. Proceedings of the National Academy of Sciences USA, 111(5), E618-E625.

2017_elife

This is the analysis code from de Gee JW, Colizoli O, Kloosterman NA, Knapen T, Nieuwenhuis S & Donner TH. 2017. Dynamic modulation of decision biases by brainstem arousal systems. eLife.

2017_naturecomms_urai

Urai AE, Braun A, Donner TH. (2017) Pupil-linked arousal is driven by decision uncertainty and alters serial choice bias. Nature Communications 8:14637.

2018_currbio_talluriurai

Repository for post-decision confirmation bias

2018_ejn_bergturai

Bergt A, Urai AE, Donner TH, Schwabe L (2018) Reading memory formation from the eyes. bioRxiv:268490.

2019_elife_desender

Repo for "Confidence predicts speed-accuracy tradeoff for subsequent decisions"

2019_urai_choice-history-ddm

Urai AE, de Gee JW, Tsetsos K, Donner TH (2019) Choice history biases subsequent evidence accumulation. eLife

2020_large-scale-dynamics-of-perceptual-decision-information-across-human-cortex

Code for "Large-scale Dynamics of Perceptual Decision Information across Human Cortex"

2021_murphy_adaptive-circuit-dynamics-across-human-cortex

Task and analysis code for "Adaptive Circuit Dynamics Across Human Cortex During Evidence Accumulation in Changing Environments"

2022_urai_choicehistory_meg

Urai & Donner (2022). Persistent Activity in Human Parietal Cortex Mediates Perceptual Choice Repetition Bias

2023_brauna_adaptive_biasing_of_action-selective_cortical_build-up_activity_by_stimulus_history

2024_monov_wm-dynamics-in-the-aging-human-brain

Task and analysis code for "Linking cognitive integrity to working memory dynamics in the aging human brain"

confidence_exp

Confidence experiment implementation in matlab/ptb

meg-preproc

Scripts for ICA-based preprocessing MEG data for both continuous and trial-based analyses

motionenergy

Urai AE & Wimmer K (2016). Spatiotemporal motion energy filtering: a Matlab implementation.

pupil_preprocessing_matlab

Preprocess EyeLink pupillometry data using the FieldTrip toolbox

pymeg

Python MEG tools for preprocessing etc.

pymode

Design of linear models.

sr-mapping

Code for van den Brink et al 2022

tutorials

Tutorial notebooks ect.