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ampa-nf

Fast automated prediction of protein antimicrobial regions

blank_testing

broad-prod-wgs-germline-snps-indels

Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://github.com/gatk-workflows/five-dollar-genome-analysis-pipeline

callings-nf

GATK RNA-Seq Variant Calling in Nextflow

dockstore-whalesay2

Sample dockstore whalesay repo for testing

dockstore-workflow-md5sum-unified

example_cwl_workflow

An example workflow using CWL

galaxy-workflow-dockstore-example-1

galaxy-workflow-dockstore-example-2

galaxy-workflows

Analysis workflows for the galaxy framework

gatk-sv-clinical

WDLs for the Clinical GATK-SV pipeline

hello-dockstore-workflow

test repo for CWL and WDL workflows

hello-wdl-workflow

hello_world

large-sourcefiles

md5sum-checker

metaphlan-isbcgc

metaphlan-sbcgc

A description of Metaphlan workflow on the Seven Bridges CGC platform

metaphlan-wdl

This is a repository for Workflow Description Language (WDL) files, which are used to run analysis on the FireCloud.

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

multi-entry

A Dockstore repo with two tools, two workflows, and a .dockstore.yml. All entries on the main branch will register successfully, other branches generally tweak the repo to test different failure conditions.

multi-step-cwl

A CWL workflow to test new and more advanced features of the language

nextflow-broken

A Nextflow workflow that is not valid in various ways.

one-workflow-many-ways

Implementing bamqc over and over again

recursive-wdl

review_repo

rnaseq-nf

A proof of concept of RNAseq pipeline

rodent-of-unusual-size

Test repo with amazing number of branches

sarek

Detect germline or somatic variants from normal or tumour/normal whole-genome sequencing data

silly-example

silly example workflow