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Bioinformatics Software Repo

Central repository for bioinformatic software and code

Collection of scripts for general sequecne analysis.

All production ready scripts are linked in the bin directory, by adding the "/Path/to/biobin/bin" to your PATH you should be all set.

Rev DJN 31May2017

Dan Nasko's Projects

binf_101 icon binf_101

BINF 101: THE code university. Scripts and datasets to supplement teaching someone to code for bioinformatics.

biobin icon biobin

Central repository for bioinformatic software and code

blasters icon blasters

Scripts corresponding to the famed Sakowski BLAST cluster (blaster) approach.

calcat icon calcat

California COVID Assessment Tool

dot_files icon dot_files

Dot files when setting up a new environment

feast icon feast

Fast expectation maximization for microbial source tracking

frameshift_polisher icon frameshift_polisher

BLAST-driven pipeline for polishing out pesky frame shifts -- particularly in PacBio reads.

ppt icon ppt

Phage Proteomic Tree

rubble icon rubble

A blast-based protein homology pipeline

thinkbayes2 icon thinkbayes2

Text and code for the forthcoming second edition of Think Bayes, by Allen Downey.

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