Comments (8)
TheAustinator
commented on May 28, 2024
38
pip install cmake==3.18.4 worked for me.
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scottgigante-immunai
commented on May 28, 2024
11
Solved with pip install git+https://github.com/jorvis/Multicore-TSNE. @DmitryUlyanov please merge #92 !
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ndwarshuis
commented on May 28, 2024
6
I just encountered the same error and can confirm downgrading cmake from 3.20.1 -> 3.19.7 was the issue. It seems the new version of cmake doesn't support the -- in its arguments. After downgrading, pip install multicoretsne works as expected.
This was effect was seen both in a pyenv/virtual environment where the python version was 3.9.2, and in a systemwide python installation where the python version was 3.9.3 (both on arch linux).
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iTomxy
commented on May 28, 2024
2
(Sept. 22, 2023) I follow the manual installing method in README, i.e.
git clone https://github.com/DmitryUlyanov/Multicore-TSNE.git
cd Multicore-TSNE/
pip install . # <- got cmake errorbut still got cmake error. My cmake version is 3.20.2. As a workaround, I manually modify the setup.py line 55, i.e. change
if version.parse(self.get_cmake_version()) < version.parse("3.22.0"):
cmake_passthru_flag = "--"
else:
cmake_passthru_flag = "-S"to
# if version.parse(self.get_cmake_version()) < version.parse("3.22.0"):
# cmake_passthru_flag = "--"
# else:
cmake_passthru_flag = "-S"Then it install correctly.
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kmoad
commented on May 28, 2024
Getting the same issue on Fedora 34 system install. Downgrading with dnf install cmake-3.19.7-1.fc34 resolved it, but it would be nice to be able to use latest cmake.
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yash-goel
commented on May 28, 2024
Hi, I still get the cmake error with 3.18.4 version.
ERROR: Command errored out with exit status 1:
command: /home/yash/anaconda3/envs/calvin_try/bin/python -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-4_pnlmiw/multicoretsne_f755883637e7456cac20fedb190b6da2/setup.py'"'"'; __file__='"'"'/tmp/pip-install-4_pnlmiw/multicoretsne_f755883637e7456cac20fedb190b6da2/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-bgyvtm0q
cwd: /tmp/pip-install-4_pnlmiw/multicoretsne_f755883637e7456cac20fedb190b6da2/
Complete output (29 lines):
running bdist_wheel
running build
running build_py
creating build
creating build/lib.linux-x86_64-3.8
creating build/lib.linux-x86_64-3.8/MulticoreTSNE
copying MulticoreTSNE/__init__.py -> build/lib.linux-x86_64-3.8/MulticoreTSNE
creating build/lib.linux-x86_64-3.8/MulticoreTSNE/tests
copying MulticoreTSNE/tests/test_base.py -> build/lib.linux-x86_64-3.8/MulticoreTSNE/tests
copying MulticoreTSNE/tests/__init__.py -> build/lib.linux-x86_64-3.8/MulticoreTSNE/tests
running egg_info
writing MulticoreTSNE.egg-info/PKG-INFO
writing dependency_links to MulticoreTSNE.egg-info/dependency_links.txt
writing requirements to MulticoreTSNE.egg-info/requires.txt
writing top-level names to MulticoreTSNE.egg-info/top_level.txt
reading manifest file 'MulticoreTSNE.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE.txt'
writing manifest file 'MulticoreTSNE.egg-info/SOURCES.txt'
running build_ext
cmake version 3.18.4
CMake suite maintained and supported by Kitware (kitware.com/cmake).
CMake Error: CMake was unable to find a build program corresponding to "Unix Makefiles". CMAKE_MAKE_PROGRAM is not set. You probably need to select a different build tool.
CMake Error: CMAKE_CXX_COMPILER not set, after EnableLanguage
-- Configuring incomplete, errors occurred!
See also "/tmp/pip-install-4_pnlmiw/multicoretsne_f755883637e7456cac20fedb190b6da2/build/temp.linux-x86_64-3.8/CMakeFiles/CMakeOutput.log".
ERROR: Cannot generate Makefile. See above errors.
----------------------------------------
ERROR: Failed building wheel for MulticoreTSNE
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divyagupta25
commented on May 28, 2024
sudo apt-get install make worked for me
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CamiloMartinezM
commented on May 28, 2024
Worked for me on a conda environment and cmake version 3.27.7.
> git clone https://github.com/DmitryUlyanov/Multicore-TSNE.git
Clonando en 'Multicore-TSNE'...
remote: Enumerating objects: 558, done.
remote: Counting objects: 100% (53/53), done.
remote: Compressing objects: 100% (38/38), done.
remote: Total 558 (delta 21), reused 35 (delta 13), pack-reused 505
Recibiendo objetos: 100% (558/558), 456.25 KiB | 5.24 MiB/s, listo.
Resolviendo deltas: 100% (314/314), listo.
> cd Multicore-TSNE/
> conda activate multicoretsne
> pip install .
Processing /home/Camilo/Documentos/Repositorios/Multicore-TSNE
Preparing metadata (setup.py) ... done
Requirement already satisfied: numpy in /home/Camilo/anaconda3/envs/multicoretsne/lib/python3.11/site-packages (from MulticoreTSNE==0.1) (1.26.4)
Requirement already satisfied: cffi in /home/Camilo/anaconda3/envs/multicoretsne/lib/python3.11/site-packages (from MulticoreTSNE==0.1) (1.16.0)
Requirement already satisfied: pycparser in /home/Camilo/anaconda3/envs/multicoretsne/lib/python3.11/site-packages (from cffi->MulticoreTSNE==0.1) (2.21)
Building wheels for collected packages: MulticoreTSNE
Building wheel for MulticoreTSNE (setup.py) ... done
Created wheel for MulticoreTSNE: filename=MulticoreTSNE-0.1-cp311-cp311-linux_x86_64.whl size=71819 sha256=a6ba096a2a986753b207a0ddaafb90f1d4e4f5d7d6e0539123b06403369c728c
Stored in directory: /home/Camilo/.cache/pip/wheels/f2/27/3a/e0b555687057204b7b11ff19c795409d809d348575b1e2eb43
Successfully built MulticoreTSNE
Installing collected packages: MulticoreTSNE
Successfully installed MulticoreTSNE-0.1
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Related Issues (20)
- Memory Allocation Fail (Big Data)
- TSNE results in dense centred ball HOT 2
- Ruby Library
- License Clarification HOT 1
- Failed building wheel for MulticoreTSNE HOT 1
- Non-verbose crash on input containing NaN
- Cannot generate Makefile. HOT 1
- Can't install on Apple M1 chip HOT 13
- Enabling verbose causes kernel crash (likely a divided by zero)
- `pip install cmake==3.18.4` worked for me.
- cmake version requirement.txt HOT 1
- signature of sklearn.datasets.make_blobs has changed
- Fix compiling HOT 5
- why can't Multicore-TSNE speed up my experiment with mnist
- linux compile
- Error in generate MING64 Makefile
- Type error with sklearn 1.2.3 HOT 1
- Static library is built but runtime is trying to load dynamic one HOT 1
- Graphics problem with tsne algorithm
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