dmgatti Goto Github PK

arsenicexposure

attiemetabolomics

Code for the Attie lab metabolite and lipid data

bioc-rnaseq

Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor

canfamhmm

carp_test

dc_2016_04

Data Carpentry materials for Jackson Labs workshop

dmgatti

Config files for my GitHub profile.

do_founder_freq

do_sanger_variants

Counting SNPs, Indels and Structural Variants in the DO that intersect with genes.

do_superovulation

Diversity Outbred superovulation

doqtl

QTL mapping for Diversity Outbred mice (and other multi-founder advanced intercrosses)

gbrs_snp

Genotyping by RNAseq using SNPs in Transcripts

gbrs_tutorial

Tutorial for Genotyping by RNA Sequencing (GBRS), which quantifies transcripts via RNASeq and genotypes the samples using SNPs in transcripts.

hs_at_ko

HS mice with AT knockout

hsnpt_genpred

HS/Npt genomic prediction for tumor prevalence

hze

Mapping suscetibility loci in HZE irradiated HS/npt mice

muga_reference_data

mugaarrays

Reconstruct annotation files for the MegaMUGA and GigaMUGA arrays

nasa-grsd-hs

NASA HZE QTL: General Code Bank

ozone

Exploratory data analysis of ground level ozone data from 1987 to 2014

pfas

Marine mammal PFAS sampling

precc_hap_reconstr

Haplotype reconstruction in a set of pre-Collaborative Cross mice

qtl2convert

R package for converting data among R/qtl2, DOQTL, and R/qtl

qtl2med

Mediation Analysis for qtl2

qtl2tricks

qtl2tricks-1

rna-seq-lesson

A Carpentries-style lesson on RNA-Sequencing

rna_sequencing

RNA Sequencing Data Analysis for Beginners

rsem

RSEM: accurate quantification of gene and isoform expression from RNA-Seq data

sandpaper-docs

Documentation for The Carpentries Workbench