dmanahan Goto Github PK
Name: David Manahan
Type: User
Company: University of Southern California
Bio: B.S. Biological Sciences M.S. Molecular Genetics
David Manahan's Projects
cutadapt
cutadapt removes adapter sequences from sequencing reads
david_manahan_bisc481
fastqc
csf fork of fastqc for usage on selected reads of unaligned bam file
htslib
C library for high-throughput sequencing data formats
install_rna-seq_software
rna-seq_pipeline
sra-tools
SRA Tools
star
RNA-seq aligner
trimgalore
A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data
ucsc_tracks
Repository for storing track hubs for viewing RNA-Seq data on the UCSC genome browser
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