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3d-cyclegan-pytorch-medimaging

Pytorch pipeline for 3D image domain translation using Cycle-Generative-Adversarial-networks, without paired examples.

3d-pix2pix-cyclegan

baselines

OpenAI Baselines: high-quality implementations of reinforcement learning algorithms

basicsr

Open Source Image and Video Restoration Toolbox for Super-resolution, Denoise, Deblurring, etc. Currently, it includes EDSR, RCAN, SRResNet, SRGAN, ESRGAN, EDVR, etc. Also support StyleGAN2, DFDNet.

bidscoin

BIDScoin converts your source-level neuroimaging data to BIDS

bidsconv

Command-line tool to convert multi-subject raw dicoms to a full BIDS formatted dataset

cntseg

codeare

Common data exchange and reconstruction engine for MRI

contrastive-unpaired-translation

Contrastive unpaired image-to-image translation, faster and lighter training than cyclegan (ECCV 2020, in PyTorch)

datalad

Keep code, data, containers under control with git and git-annex

deepsphere-pytorch

DeepSphere: a graph-based spherical CNN (PyTorch)

dipy

Diffusion MR Imaging in Python

djoerch.github.io

docker-pytorch

A Docker image for PyTorch

freesurfer_bids_app

recon-all from FreeSurfer

hodaie-teem

Fork of TEEM library for the Hodaie Lab

mne-bids

MNE-BIDS is a Python package that allows you to read and write BIDS-compatible datasets with the help of MNE-Python.

mne-bids-pipeline

Automatically process entire electrophysiological datasets using MNE-Python.

moab_taskman

Task manager for handling many long running machine learning experiments

neurocontainers

The containers can be used in combination with our transparent singularity or neurocommand tool, that wrap the executables inside a container to make them easily available for pipelines

neurodocker

Generate custom Docker and Singularity images, and minimize existing containers

nipype

Workflows and interfaces for neuroimaging packages

project_template

Project folder template for my projects.

pytorch-a2c-ppo-acktr-gail

PyTorch implementation of Advantage Actor Critic (A2C), Proximal Policy Optimization (PPO), Scalable trust-region method for deep reinforcement learning using Kronecker-factored approximation (ACKTR) and Generative Adversarial Imitation Learning (GAIL).

pytorch-ssim-3d

pytorch structural similarity (SSIM) loss for 3D images

randomised_filtering

Code for randomised tractogram filtering using rSIFT

sagit

scilpy

The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox

segsrgan

tractoflow

TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity