Comments (6)
djgroen
commented on July 17, 2024
@mvassaux Any update on this yet? :)
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mvassaux
commented on July 17, 2024
the configuration has been commited and pushed, it seemed to work when I try the Dummy version (very useful for testing btw), I get the following messages:
fab eagle lammps_dummy:lammps_dummy,cores=1,wall_time=1:00:0
[maxime@None] Executing task 'eagle'
[[email protected]] Executing task 'lammps_dummy'
[[email protected]] Executing task 'put_configs'
[[email protected]] run: mkdir -p /tmp/lustre_shared/plgvassaux/FabSim3/config_files; mkdir -p /tmp/lustre_shared/plgvassaux/FabSim3/results; mkdir -p /tmp/lustre_shared/plgvassaux/FabSim3/scripts; mkdir -p /tmp/lustre_shared/plgvassaux/FabSim3/config_files/lammps_dummy
[[email protected]] Login password for 'plgvassaux':
[[email protected]] rsync_project: rsync -pthrvz --rsh='ssh -p 22 ' /home/maxime/local_projects/FabSim3/config_files/lammps_dummy/ [email protected]:/tmp/lustre_shared/plgvassaux/FabSim3/config_files/lammps_dummy
[localhost] local: rsync -pthrvz --rsh='ssh -p 22 ' /home/maxime/local_projects/FabSim3/config_files/lammps_dummy/ [email protected]:/tmp/lustre_shared/plgvassaux/FabSim3/config_files/lammps_dummy
[email protected]'s password:
sending incremental file list
sent 62 bytes received 11 bytes 16.22 bytes/sec
total size is 678 speedup is 9.29
[localhost] local: git rev-parse HEAD
stdout: 3361bb65323d75ea6a2d6941d8373b535174a662
stderr:
[[email protected]] put: /home/maxime/local_projects/FabSim3/deploy/.jobscripts/lammps_dummy_eagle_1.sh -> /tmp/lustre_shared/plgvassaux/FabSim3/scripts/lammps_dummy_eagle_1.sh
[[email protected]] run: mkdir -p /tmp/lustre_shared/plgvassaux/FabSim3/results/lammps_dummy_eagle_1
[localhost] local: cat /home/maxime/.bash_history | grep fab
stdout: fab localhost lammps:lammps_lj_liquid,cores=1,wall_time=1:00:0
fab localhost lammps:lammps_lj_liquid,cores=1,wall_time=1:00:0
fab localhost install_plugin:FabMD
fab localhost setup_fabsim_dirs
vim /home/maxime/local_projects/FabSim3/fabfile.py
fab localhost setup_fabsim_dirs
fab localhost setup_fabsim
which fab
cat fabfile.py
vim setup_fabsim.py
fab localhost setup_fabsim
vim fabfile.py
fab localhost setup_fabsim
fab localhost setup_fabsim
fab localhost setup_fabsim_dirs
fab localhost lammps:lammps_lj_liquid,cores=1,wall_time=1:00:0
vim fabfile.py
fab localhost lammps:lammps_lj_liquid,cores=1,wall_time=1:00:0
fab localhost lammps:lammps_lj_liquid,cores=1,wall_time=1:00:0
fab eagle lammps:lammps_lj_liquid,cores=1,wall_time=1:00:0
stderr:
[[email protected]] run: cp /tmp/lustre_shared/plgvassaux/FabSim3/scripts/lammps_dummy_eagle_1.sh /tmp/lustre_shared/plgvassaux/FabSim3/results/lammps_dummy_eagle_1
[[email protected]] put: /tmp/tmpgef1viyw -> /tmp/lustre_shared/plgvassaux/FabSim3/results/lammps_dummy_eagle_1/env.yml
[[email protected]] run: chmod u+x /tmp/lustre_shared/plgvassaux/FabSim3/scripts/lammps_dummy_eagle_1.sh
[[email protected]] run: sbatch /tmp/lustre_shared/plgvassaux/FabSim3/scripts/lammps_dummy_eagle_1.sh
[[email protected]] out: ===============================================================================
[[email protected]] out: Poznan Supercomputing and Networking Center
[[email protected]] out:
[[email protected]] out: eagle.man.poznan.pl
[[email protected]] out: ===============================================================================
[[email protected]] out:
[[email protected]] out:
[[email protected]] out: 'module load' works only on Wn(worker nodes)!
[[email protected]] out: To use module load please create job/interactive job.
[[email protected]] out: Here you will find more information about how to create/submmit jobs on eagle
[[email protected]] out: https://wiki.man.poznan.pl/hpc/index.php?title=Podr%C4%99cznik_u%C5%BCytkownika
[[email protected]] out:
[[email protected]] out:
[[email protected]] out: ===============================================================================
[[email protected]] out: Best Regards
[[email protected]] out:
[[email protected]] out: hpc admins
[[email protected]] out: ===============================================================================
[[email protected]] out:
[[email protected]] out: Submitted batch job 8905978
[[email protected]] out:
Done.
Disconnecting from [email protected]... done.
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mvassaux
commented on July 17, 2024
I have a question though, how do I get back the results when the submitted job is complete? Is this automated?
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djgroen
commented on July 17, 2024
Simple: just type
fab eagle fetch_results
The results will then be in a subdirectory of the results directory of your local installation.
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mvassaux
commented on July 17, 2024
cheers 👍
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djgroen
commented on July 17, 2024
Okay, it seems that this works, so I'll prepare the alpha release now :).
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