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augustus

Genome annotation with AUGUSTUS

awesome-emacs

A community driven list of useful Emacs packages, libraries and others.

awesome-pipeline

A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

bd2k-python-lib

The BD2K Python module kitchen sink

bioconda-recipes

Conda recipes for the bioconda channel.

bioregistry

📮 An integrative registry of biological databases, ontologies, and nomenclatures.

cactus

Genome aligner based upon notion of Cactus graphs

cactus2hal

cgtbuild

Build of Cactus and Compatative Genomics Toolkit, including dependencies

chunkymonkey

Completely useless toy for experimenting with chunked encoding

comparative-annotation-toolkit

cpecan

C + python code for pairwise multiple sequence alignment, pulling out this functionality from the Cactus alignment program.

cpython

The Python programming language

dcp-community

HCA Data Coordination Platform community content

duplicacy

A new generation cloud backup tool

emacs-jupyter

An interface to communicate with Jupyter kernels.

eutils

simplified searching, fetching, and parsing records from NCBI using their E-utilities interface

flair

Full-Length Alternative Isoform analysis of RNA

flatbuffersplay

ga4gh-compliance

A compliance test suite for the APIs defined in the schemas repository.

ga4gh-schemas

Work on data models and APIs for Genomic data.

ga4gh-server

A reference implementation of the APIs defined in the schemas repository.

gdata-python-client

gencode-backmap

Mapping of GENCODE gene annotation set files to older assembies

gencode-icedb

GENCODE Independently Collected Evidence Database

hal

Hierarchical Alignment Format

hal-benchmarks

Benchmarking HAL

hca-metadata-merge

Prototype code to generate combined metadata JSON files.

hprc_assembly_hub

hts-specs

Specifications of SAM/BAM and related high-throughput sequencing file formats