Comments (3)
This is fixed with StaPH-B/docker-builds#589
from snvphyl_nextflow.
Hi @PHemarajata,
This looks like its an error with PhyML and not this pipeline. Can you provided the error and out files from this run and a description of the dataset. You can find the error and out files in the working directory listed /home/peerahemarajata/SNVPhyl_Nextflow/work/80/f348a74a1f4fb5b24e54eb6b3951ab/. command.err
and /home/peerahemarajata/SNVPhyl_Nextflow/work/80/f348a74a1f4fb5b24e54eb6b3951ab/.command.out
.
from snvphyl_nextflow.
.command.err
/home/peerahemarajata/SNVPhyl_Nextflow/work/80/f348a74a1f4fb5b24e54eb6b3951ab/.command.sh: line 2: 382243 Illegal instruction (core dumped) phyml -i snvAlignment.phy --datatype nt --model GTR -v 0.0 -s BEST --ts/tv e --nclasses 4 --alpha e --bootstrap -4 --quiet
.command.out is totally empty.
The dataset is 4 paired end ILM samples with one reference. The phylip output from the pipeline that was used in this step is attached.
snvAlignment.zip
from snvphyl_nextflow.
Related Issues (1)
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