Comments (2)
@heartonbit thanks for the issue and digging through the source code! Cheers.
PC7 means Pathway Commons version 7 and digits after the underscore is just sequence number. So, the id is not something I look for.
Right, identifier
appears to be just an internal ID here.
from pathways.
I found the answer from the code
PC7 means Pathway Commons version 7 and digits after the underscore is just sequence number.
So, the id is not something I look for.
from https://github.com/dhimmel/pathways/blob/master/merge-resources.ipynb
for name, description, genes in read_gmt(path):
...
# Add pathway
i += 1
row = PC_Row(
identifier = 'PC7_{}'.format(i),
name = name,
source = description['datasource'],
genes = genes,
)
rows.append(row)
I try to parse the original gmt file to get the same sequence numbers.
from pathways.
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from pathways.