Question about DevSim Compile CGNS: about devsim HOT 19 CLOSED

the easiest thing may be to set BUILD_CGNSTOOLS=OFF

Juan
On May 12, 2015 10:16 PM, "chihiro0019" [email protected] wrote:

Sorry to bother you, but I am trying to compile DevSim and met a problem.
How can I define TCL TK paths ?

1. cmake -DBUILD_CGNSTOOLS=ON
   -DCMAKE_INSTALL_PREFIX=$PWD/../../cgnslib ..

-- Could NOT find TCL (missing: TCL_INCLUDE_PATH)
-- Could NOT find TCLTK (missing: TCL_INCLUDE_PATH TK_INCLUDE_PATH)
-- Could NOT find TK (missing: TK_INCLUDE_PATH)
CMake Error at src/cgnstools/CMakeLists.txt:48 (message):
The path and library needs to be defined for:

TCL;TK

-- Configuring incomplete, errors occurred!

—
Reply to this email directly or view it on GitHub
#4.

from devsim.

Thank you for your advice. I could make CGNS. Then,
I tried to go to

Compile SYMDIFF

1. cd external/symdiff
2. sh scripts/setup_ubuntu_12.04.sh
3. cd linux_x86_64_release
4. make -j2
5. ctest -j2

But, there is no file

$ pwd
/home/s037156b/MyC/DeviceSim/DevSim/devsim-master/external
$ ls
. cgnslib_3.1.4 superlu_osx_10.10.sh superlu_ubuntu_12.04.sh symdiff
.. cgnslib_3.1.4.tar.gz superlu_osx_10.9.sh superlu_ubuntu_12.04_gcc-4.7.sh
SuperLU_4.3 superlu_4.3.tar.gz superlu_redhat_6.5.sh superlu_ubuntu_12.04_icc_2013.sh

$ pwd
/home/s037156b/MyC/DeviceSim/DevSim/devsim-master/external/symdiff
$ ls
. ..
Is anything wrong ?

from devsim.

Hi,

Please do:
git submodule init
git submodule update

in the devsim directory.

Regards,

Juan

On Wed, May 13, 2015 at 12:38 AM, chihiro0019 [email protected]
wrote:

Thank you for your advice. I could make CGNS. Then,
I tried to go to

Compile SYMDIFF

1. cd external/symdiff
2. sh scripts/setup_ubuntu_12.04.sh
3. cd linux_x86_64_release
4. make -j2
5. ctest -j2

But, there is no file

$ pwd
/home/s037156b/MyC/DeviceSim/DevSim/devsim-master/external
$ ls
. cgnslib_3.1.4 superlu_osx_10.10.sh superlu_ubuntu_12.04.sh symdiff
.. cgnslib_3.1.4.tar.gz superlu_osx_10.9.sh
superlu_ubuntu_12.04_gcc-4.7.sh
SuperLU_4.3 superlu_4.3.tar.gz superlu_redhat_6.5.sh
superlu_ubuntu_12.04_icc_2013.sh

$ pwd
/home/s037156b/MyC/DeviceSim/DevSim/devsim-master/external/symdiff
$ ls
. ..
Is anything wrong ?

—
Reply to this email directly or view it on GitHub
#4 (comment).

from devsim.

Thank you for your reply.
But I'm not familiar with "git". I found some web pages about it.
However could you tell me the right way to install "git" for DevSim ?
The command "git" is not in our machines.

from devsim.

I tried this instruction below according to "git" web site, however
I am using computer farm and I can not be the root.
Maybe I should ask our system manager to do it ?

$ yum install curl-devel expat-devel gettext-devel openssl-devel zlib-devel

You need to be root to perform this commnd.

from devsim.

git is difficult to compile. Download the symdiff package from:
http://github.com/devsim/symdiff

and put the symdiff directory in the external directory of devsim.

Juan

On 5/13/15 7:19 PM, Kimihiro wrote:

I tried this instruction below according to "git" web site, however
I am using computer farm and I can not be the root.
Maybe I should ask our system manager to do it ?

$ yum install curl-devel expat-devel gettext-devel openssl-devel
zlib-devel

You need to be root to perform this commnd.

—
Reply to this email directly or view it on GitHub
#4 (comment).

from devsim.

Thank you for your reply.

I donwloaded http://github.com/devsim/symdiff and put it as below.

$ pwd
/home/s037156b/MyC/DeviceSim/DevSim/devsim-master/external
$ ls
. cgnslib_3.1.4 superlu_osx_10.10.sh superlu_ubuntu_12.04.sh symdiff
.. cgnslib_3.1.4.tar.gz superlu_osx_10.9.sh superlu_ubuntu_12.04_gcc-4.7.sh symdiff-master
SuperLU_4.3 superlu_4.3.tar.gz superlu_redhat_6.5.sh superlu_ubuntu_12.04_icc_2013.sh symdiff-master.zip

In symdiff directory, there is no file.
I tried to install symdiff from symdiff-master directory, but

[s037156b@xhz352 symdiff-master]$ cmake g++ flex bison python tcl tcl-dev python-dev
CMake Error: The source directory "/home/s037156b/MyC/DeviceSim/DevSim/devsim-master/external/symdiff-master/python-dev" does not exist.

What should I do ?

from devsim.

According to our system manager, we have a git
/tooltop/vendor/utility/git_1.8.5.4

I tried to install DEVSIM

$ git clone git://github.com/devsim/devsim.git
Cloning into 'devsim'...
fatal: Unable to look up github.com (port 9418) (Name or service not known)

This may be a different problem about networking ?

from devsim.

You may replace the external/symdiff directory with the one you downloaded.
rm -rf symdiff
mv symdiff-master symdiff

then follow the instructions in symdiff/INSTALL. You may need to use:
symdiff/scripts/setup_redhat_6.5.sh
https://github.com/devsim/symdiff/blob/master/scripts/setup_redhat_6.5.sh

so that it is appropriate for redhat 5. You may have problems with the
c++ compiler, because you need to support advanced c++ features not
available in redhat 5.

Regards,

Juan

On 5/13/15 8:04 PM, Kimihiro wrote:

Thank you for your reply.

I donwloaded http://github.com/devsim/symdiff
https://github.com/devsim/symdiff and put it as below.

$ pwd
/home/s037156b/MyC/DeviceSim/DevSim/devsim-master/external
$ ls
. cgnslib_3.1.4 superlu_osx_10.10.sh superlu_ubuntu_12.04.sh symdiff
.. cgnslib_3.1.4.tar.gz superlu_osx_10.9.sh
superlu_ubuntu_12.04_gcc-4.7.sh symdiff-master
SuperLU_4.3 superlu_4.3.tar.gz superlu_redhat_6.5.sh
superlu_ubuntu_12.04_icc_2013.sh symdiff-master.zip

In symdiff directory, there is no file.
I tried to install symdiff from symdiff-master directory, but

[s037156b@xhz352 symdiff-master]$ cmake g++ flex bison python tcl
tcl-dev python-dev
CMake Error: The source directory
"/home/s037156b/MyC/DeviceSim/DevSim/devsim-master/external/symdiff-master/python-dev"
does not exist.

What should I do ?

—
Reply to this email directly or view it on GitHub
#4 (comment).

from devsim.

This sounds like a networking issue.

On 5/13/15 8:15 PM, Kimihiro wrote:

According to our system manager, we have a git
/tooltop/vendor/utility/git_1.8.5.4

I tried to install DEVSIM

$ git clone git://github.com/devsim/devsim.git
Cloning into 'devsim'...
fatal: Unable to look up github.com (port 9418) (Name or service not
known)

This may be a different problem about networking ?

—
Reply to this email directly or view it on GitHub
#4 (comment).

from devsim.

I set up proxy and the situation was changed. But still doesn't work.

$ git config --global http.proxy proxy.xxx.xxx.co.jp:10080
$ git submodule init
fatal: Not a git repository (or any parent up to mount point /home/s037156b)
Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).

from devsim.

You would need to clone devsim first so that you have a .git directory
as part of the software.

1. git clone git://github.com/devsim/devsim.git
2. cd devsim
3. git submodule init
4. git submodule update

On 5/14/15 3:21 AM, Kimihiro wrote:

I set up proxy and the situation was changed. But still doesn't work.

$ git config --global http.proxy proxy.xxx.xxx.co.jp:10080
$ git submodule init
fatal: Not a git repository (or any parent up to mount point
/home/s037156b)
Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).

—
Reply to this email directly or view it on GitHub
#4 (comment).

from devsim.

Yes, thank you, I tried it first. But it didn't work.

$ pwd
/home/s037156b/MyC/DeviceSim/DevSim/devsim-master
$ git config --global http.proxy proxy.xxxx.xxxx.co.jp:10080
$ git clone git://github.com/devsim/devsim.git
Cloning into 'devsim'...
fatal: Unable to look up github.com (port 9418) (Name or service not known)

from devsim.

You can also use github over a firewall using http:
https://github.com/blog/92-http-cloning

So try:
git clone http://github.com/devsim/devsim.git
or
git clone https://github.com/devsim/devsim.git

On Thu, May 14, 2015 at 6:16 PM, Kimihiro [email protected] wrote:

Yes, thank you, I tried it first. But it didn't work.

$ git config --global http.proxy proxy.xxxx.xxxx.co.jp:10080
$ git clone git://github.com/devsim/devsim.git
Cloning into 'devsim'...
fatal: Unable to look up github.com (port 9418) (Name or service not
known)

—
Reply to this email directly or view it on GitHub
#4 (comment).

from devsim.

Oh, thank you. I went forward a little, and I still have another problem shown below.
The last one 'git submodule update' seems to fail.

$ git clone http://github.com/devsim/devsim.git
Cloning into 'devsim'...
remote: Counting objects: 1767, done.
remote: Total 1767 (delta 0), reused 0 (delta 0), pack-reused 1767
Receiving objects: 100% (1767/1767), 30.69 MiB | 263.00 KiB/s, done.
Resolving deltas: 100% (1067/1067), done.
Checking connectivity... done.
Checking out files: 100% (785/785), done.

$ git submodule init
Submodule 'external/symdiff' (git://github.com/devsim/symdiff.git) registered for path 'external/symdiff'

$ git submodule update
Cloning into 'external/symdiff'...
fatal: Unable to look up github.com (port 9418) (Name or service not known)
Clone of 'git://github.com/devsim/symdiff.git' into submodule path 'external/symdiff' failed

from devsim.

edit the following file:
devsim/.git/config

and change the line for symdiff to use http:// instead of git://

On Thu, May 14, 2015 at 9:20 PM, Kimihiro [email protected] wrote:

Oh, thank you. I went forward a little, and I still have another problem
shown below.
The last one 'git submodule update' seems to fail.

$ git clone http://github.com/devsim/devsim.git
https://github.com/devsim/devsim.git
Cloning into 'devsim'...
remote: Counting objects: 1767, done.
remote: Total 1767 (delta 0), reused 0 (delta 0), pack-reused 1767
Receiving objects: 100% (1767/1767), 30.69 MiB | 263.00 KiB/s, done.
Resolving deltas: 100% (1067/1067), done.
Checking connectivity... done.
Checking out files: 100% (785/785), done.

$ git submodule init
Submodule 'external/symdiff' (git://github.com/devsim/symdiff.git)
registered for path 'external/symdiff'

$ git submodule update
Cloning into 'external/symdiff'...
fatal: Unable to look up github.com (port 9418) (Name or service not
known)
Clone of 'git://github.com/devsim/symdiff.git' into submodule path
'external/symdiff' failed

—
Reply to this email directly or view it on GitHub
#4 (comment).

from devsim.

Thank you, I tried 2 cases, // instead of git:// and //instead of git://
But both didn't work.

$ git submodule update
Cloning into 'external/symdiff'...
fatal: unable to access 'http:// instead of git://': The requested URL returned error: 406
Clone of 'http:// instead of git://' into submodule path 'external/symdiff' failed
$ git submodule update
Cloning into 'external/symdiff'...
fatal: unable to access 'http://instead of git://': The requested URL returned error: 406
Clone of 'http://instead of git://' into submodule path 'external/symdiff' failed

from devsim.

try:
cd devsim/external
rm -rf symdiff
git clone
On May 14, 2015 10:15 PM, "Kimihiro" [email protected] wrote:

Thank you, I tried 2 cases, // instead of git:// and //instead of git://
But both didn't work.

$ git submodule update
Cloning into 'external/symdiff'...
fatal: unable to access 'http:// instead of git://': The requested URL
returned error: 406
Clone of 'http:// instead of git://' into submodule path
'external/symdiff' failed
$ git submodule update
Cloning into 'external/symdiff'...
fatal: unable to access 'http://instead of git://': The requested URL
returned error: 406
Clone of 'http://instead of git://' into submodule path
'external/symdiff' failed

—
Reply to this email directly or view it on GitHub
#4 (comment).

from devsim.

Thank you for your kind support.
I still have some problems, but I give up to continue.
I heard that the other guys in my company have already installed this.
They are using local machine on which they can be the root unlike my case.
It might be the largest problem for me. I apologize it and thank you for your
very kind support, I appreciate you.

from devsim.