Comments (4)
It looks like the syntax changed for egglib v.3, which is super new and still apparently in beta testing. Sorry, I know egglib is a pain to install, but you'll have to go back to egglib v2 for simrrls to work.
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Hi
Thanks for the reply.
I re-installed simrrls using egglib 2.1.11 and it works now.
from simrrls.
Hi,
I have run into the same problem.
When I call simrrls I get the following error message:
$ simrrls
Traceback (most recent call last):
File "/Users/ClaudiaPaetzold/anaconda2/bin/simrrls", line 9, in
load_entry_point('simrrls==0.0.10', 'console_scripts', 'simrrls')()
File "build/bdist.macosx-10.5-x86_64/egg/simrrls/main.py", line 17, in main
File "build/bdist.macosx-10.5-x86_64/egg/simrrls/simrrls.py", line 464, in run
File "build/bdist.macosx-10.5-x86_64/egg/simrrls/simrrls.py", line 29, in checkopts
File "build/bdist.macosx-10.5-x86_64/egg/simrrls/simrrls.py", line 87, in defaulttree
AttributeError: 'module' object has no attribute 'simul'
However, I have installed eggless v2.1.11.
Any hints?
P.S. python v 2.7
numpy v1.11.0
Thank You
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Hi Claudia
Not quite sure what could be wrong.
I've heard that Mac OS X comes with a slightly different python version
compared to linux.
I don't have a Mac OS X 10.5 installation around somewhere, thus I can't
really check this myself.
Please find below my installation notes. Maybe you can find out what is
different compared to your setup or your installation...
notes:
- the prefix during the egglib installation is because I didn't want to
overwrite the system defaults - just "pip install ." in the simrrls folder didn't work for me, I had
to use "pip install --upgrade ." - After creating the anaconda environment, the environment has to be
initiated and all subsequent setup steps need to be executed within that
environment
HTH
Chris
cd /usr/local/anaconda/bin
conda create -n simrrls python=2.7 numpy pip
--> installs the following dependencies:
mkl: 11.3.1-0
numpy: 1.11.0-py27_0
openssl: 1.0.2g-0
pip: 8.1.1-py27_1
python: 2.7.11-0
readline: 6.2-2
setuptools: 20.7.0-py27_0
sqlite: 3.9.2-0
tk: 8.5.18-0
wheel: 0.29.0-py27_0
zlib: 1.2.8-0
To activate this environment, use:
$ source activate simrrls
To deactivate this environment, use:
$ source deactivate
""""""""""""""""""""""""""""""""""""""""
source /usr/local/anaconda/bin/activate simrrls
cd /usr/local/build
==== egglib v2.1.11 =====
see http://mycor.nancy.inra.fr/egglib/releases/2.1.11/egglib.pdf for
installation
mkdir /usr/local/egglib-2.1.11
wget
http://mycor.nancy.inra.fr/egglib/releases/2.1.11/egglib-cpp-2.1.11.tar.gz
wget
http://mycor.nancy.inra.fr/egglib/releases/2.1.11/egglib-py-2.1.11.tar.gz
tar zxvf egglib-cpp-2.1.11.tar.gz
tar zxvf egglib-py-2.1.11.tar.gz
cd egglib-cpp-2.1.11
./configure --prefix=/usr/local/egglib-2.1.11
make
make install
cd ..
cd egglib-py-2.1.11
python setup.py build --prefix=/usr/local/egglib-2.1.11
python setup.py install --prefix=/usr/local/egglib-2.1.11
==== simrrls ====
cd ..
git clone https://github.com/dereneaton/simrrls.git
cd simrrls
pip install --upgrade .
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